I finally found a resolution to this issue. The 2.0 update moved the logic that displays the shipping methods on the cart and review order pages to it's own file, with some changes. If you are using a modified template for these pages as I am, by removing the code that displays the shipping options and pulling the new file with the following code it should work properly. At least it did for me, good luck.
<?php woocommerce_get_template( 'cart/shipping-methods.php', array( 'available_methods' => $available_methods ) ); ?>