I guess you just query the database
$var = $wpdb->get_var( "
SELECT wm.meta_value
FROM wp_woocommerce_order_itemmeta wm JOIN
wp_woocommerce_order_items wo
ON wm.order_item_id = wo.order_item_id
WHERE wo.order_item_name = 'MY ITEM'
AND wm.meta_key= 'MY KEY'
AND wo.order_id = $order->id
");
This will return the meta_value from the table for this item in this order.